Only recently, however, did it occur to me to ask "so what forms is MrBayes available in?".
My research showed that it's available in source form for UNIX, and comes with a nice pre-build Makefile. Better still, and in deference to the many other programs (such as Muscle, Clustal-X, IQPNNI and so forth) that seem to bolt on parallelism as an afterthought - usually as the result of the work of another programmer entirely - this comes with MPI support built-in. The only minor pity is that the Makefile doesn't have a target to support it, so you have to make it using the slightly different command line they suggest on their FAQ. In fact, you seem to be better editing the Makefile and changing the 'MPI =? no' option, which does use mpicc despite the FAQ warning you not to. And why not separate build options to build MPI and single binaries - the former needs quite a different environment to run. Who knows what these crazy programmers are up to?
So now I've got a multiprocessor MPI-capable version, but when I run it under LAM MPI it berks out with:
MPI_Recv: message truncated (rank 1, comm 3) Rank (2, MPI_COMM_WORLD): Call stack within LAM: Rank (2, MPI_COMM_WORLD): - MPI_Recv() Rank (2, MPI_COMM_WORLD): - MPI_Bcast() Rank (2, MPI_COMM_WORLD): - MPI_Bcast() Rank (2, MPI_COMM_WORLD): - main() MPI_Recv: message truncated (rank 2, comm 3) Rank (4, MPI_COMM_WORLD): Call stack within LAM: Rank (4, MPI_COMM_WORLD): - MPI_Recv() Rank (4, MPI_COMM_WORLD): - MPI_Bcast() Rank (4, MPI_COMM_WORLD): - MPI_Bcast()So, still some work to be done. But at least the dual-core Pentium is now running Fedora all the time, so I can actually use it.
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